quorum

QUality Optimized Reads of genomic sequences

QuorUM enables to obtain trimmed and error-corrected reads that result in assemblies with longer contigs and fewer errors. QuorUM provides best performance compared to other published error correctors in several metrics. QuorUM is efficiently implemented making use of current multi- core computing architectures and it is suitable for large data sets (1 billion bases checked and corrected per day per core). The third-party assembler (SOAPdenovo) benefits significantly from using QuorUM error- corrected reads. QuorUM error corrected reads result in a factor of 1.1 to 4 improvement in N50 contig size compared to using the original reads with SOAPdenovo for the data sets investigated.

userpath

tool for adding locations to the user PATH - CLI tool

userpath is a command-line tool and Python library to add custom locations to user PATH. Only user-specific PATH is changed, avoiding the need for elevated privileges.

science-datamanagement

Debian Science Data Management packages

This metapackage will install packages to assist with data management tasks, such as obtaining data from remote resources, keeping data under version control, etc.

science-distributedcomputing

Debian Science Distributed Computing packages

This metapackage will install Debian Science packages useful for various types of distributed computing, such as grid-, cloud-, cluster- and parallel-computing.

science-linguistics

Debian Science Linguistics packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Linguistics.

science-logic

Debian Science Logic packages

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to Computational Logic. It contains formula transformation tools, solvers for formulas specified in various logics, interactive proof systems, etc.