quorum
QUality Optimized Reads of genomic sequences
QuorUM enables to obtain trimmed and error-corrected reads that result
in assemblies with longer contigs and fewer errors. QuorUM provides best
performance compared to other published error correctors in several
metrics. QuorUM is efficiently implemented making use of current multi-
core computing architectures and it is suitable for large data sets (1
billion bases checked and corrected per day per core). The third-party
assembler (SOAPdenovo) benefits significantly from using QuorUM error-
corrected reads. QuorUM error corrected reads result in a factor of 1.1
to 4 improvement in N50 contig size compared to using the original reads
with SOAPdenovo for the data sets investigated.
userpath
tool for adding locations to the user PATH - CLI tool
userpath is a command-line tool and Python library
to add custom locations to user PATH.
Only user-specific PATH is changed,
avoiding the need for elevated privileges.
science-datamanagement
Debian Science Data Management packages
This metapackage will install packages to assist with data management
tasks, such as obtaining data from remote resources, keeping data
under version control, etc.
science-distributedcomputing
Debian Science Distributed Computing packages
This metapackage will install Debian Science packages useful for
various types of distributed computing, such as grid-, cloud-, cluster-
and parallel-computing.
science-linguistics
Debian Science Linguistics packages
This metapackage is part of the Debian Pure Blend "Debian Science"
and installs packages related to Linguistics.
science-logic
Debian Science Logic packages
This metapackage is part of the Debian Pure Blend "Debian Science"
and installs packages related to Computational Logic. It contains
formula transformation tools, solvers for formulas specified in
various logics, interactive proof systems, etc.