r-cran-rnexml
GNU R package for semantically rich I/O for the 'NeXML' format
Provides access to phyloinformatic data in 'NeXML' format. The package
should add new functionality to R such as the possibility to manipulate
'NeXML' objects in more various and refined way and compatibility with
'ape' objects.
profbval
predictor of flexible/rigid protein residues from sequence
PROFbval can be useful for both protein structure and
function predictions. For instance, a biologist can locate potentially
antigenic determinants by identifying the most flexible residues on the
protein surface. Additionally, a crystallographer can locate residues that
potentially have high experimental B-values.
hmmer2
profile hidden Markov models for protein sequence analysis
HMMER is an implementation of profile hidden Markov model methods for
sensitive searches of biological sequence databases using multiple sequence
alignments as queries.
profisis
prediction of protein-protein interaction sites from sequence
Profisis (ISIS) identifies interacting protein residues in protein-protein
interfaces from sequence alone.
libb-hooks-op-ppaddr-perl
C API to hook into Perl opcode execution
B::Hooks::OP::PPAddr provides a C API for XS modules to hook into the
execution of Perl opcodes.