r-cran-rnexml

GNU R package for semantically rich I/O for the 'NeXML' format

Provides access to phyloinformatic data in 'NeXML' format. The package should add new functionality to R such as the possibility to manipulate 'NeXML' objects in more various and refined way and compatibility with 'ape' objects.

libpoppler126

PDF rendering library

Poppler is a PDF rendering library based on Xpdf PDF viewer.

profbval

predictor of flexible/rigid protein residues from sequence

PROFbval can be useful for both protein structure and function predictions. For instance, a biologist can locate potentially antigenic determinants by identifying the most flexible residues on the protein surface. Additionally, a crystallographer can locate residues that potentially have high experimental B-values.

hmmer2

profile hidden Markov models for protein sequence analysis

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.

profisis

prediction of protein-protein interaction sites from sequence

Profisis (ISIS) identifies interacting protein residues in protein-protein interfaces from sequence alone.

libb-hooks-op-ppaddr-perl

C API to hook into Perl opcode execution

B::Hooks::OP::PPAddr provides a C API for XS modules to hook into the execution of Perl opcodes.