hmmer2-pvm

HMMER programs with PVM (Parallel Virtual Machine) support

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.

flexbar

flexible barcode and adapter removal for sequencing platforms

Flexbar preprocesses high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar increases mapping rates and improves genome and transcriptome assemblies. It supports next-generation sequencing data in fasta/q and csfasta/q format from Illumina, Roche 454, and the SOLiD platform.

python-sphinx-paramlinks

Sphinx extension to make param links linkable (Python 2 version)

Sphinx extension which allows :param: directives within Python documentation to be linkable.

libstfl-ruby

Ruby bindings for the structured terminal forms language/library

stfl is a library which implements a curses-based widget set for text terminals.

libsop-java-picocli-java

Stateless OpenPGP Protocol API and CLI for Java - picocli wrapper

The Stateless OpenPGP Protocol specification defines a generic stateless CLI for dealing with OpenPGP messages. Its goal is to provide a minimal, yet powerful API for the most common OpenPGP related operations.

libroot-io-xmlparser5.34

XML parser of ROOT objects - runtime library