codonw

Correspondence Analysis of Codon Usage

CodonW is a package for codon usage analysis. It was designed to simplify Multivariate Analysis (MVA) of codon usage. The MVA method employed in CodonW is correspondence analysis (COA) (the most popular MVA method for codon usage analysis). CodonW can generate a COA for codon usage, relative synonymous codon usage or amino acid usage. Additional analyses of codon usage include investigation of optimal codons, codon and dinucleotide bias, and/or base composition. CodonW analyses sequences encoded by genetic codes other than the universal code.

python-vmware-nsx

OpenStack virtual network service - VMWare NSX plugin

Neutron provides an API to dynamically request and configure virtual networks. These networks connect "interfaces" from other OpenStack services (such as vNICs from Nova VMs). The Neutron API supports extensions to provide advanced network capabilities, including QoS, ACLs, and network monitoring.

crossbuild-essential-s390x

Informational list of cross-build-essential packages

If you do not plan to cross build Debian packages, you don't need this package. Starting with sbuild (>= 0.63.0) this package is required for cross building Debian packages in a chroot.

fastml

maximum likelihood ancestral amino-acid sequence reconstruction

FastML is a bioinformatics tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences. FastML runs several algorithms that reconstruct the ancestral sequences with emphasis on an accurate reconstruction of both indels and characters. For character reconstruction the previously described FastML algorithms are used to efficiently infer the most likely ancestral sequences for each internal node of the tree. Both joint and the marginal reconstructions are provided. For indels reconstruction the sequences are first coded according to the indel events detected within the multiple sequence alignment (MSA) and then a state-of-the-art likelihood model is used to reconstruct ancestral indels states. The results are the most probable sequences, together with posterior probabilities for each character and indel at each sequence position for each internal node of the tree. FastML is generic and is applicable for any type of molecular sequences (nucleotide, protein, or codon sequences).

libmessagecore4

message core library

libwnck1.0-cil-dev

CLI binding for wnck 2.24