librte-dma-ioat22

Data Plane Development Kit (librte-dma-ioat runtime library)

DPDK is a set of libraries for fast packet processing. Applications run in user-space and communicate directly with dedicated network interfaces.

librte-eal22

Data Plane Development Kit (librte-eal runtime library)

DPDK is a set of libraries for fast packet processing. Applications run in user-space and communicate directly with dedicated network interfaces.

python3-json-log-formatter

JSON formatter logging for Python

This library allows one to configure Python logging to use a JSON formatter.

snippy-examples

rapid haploid variant calling and core genome alignment (examples)

Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. It will find both substitutions (snps) and insertions/deletions (indels). It will use as many CPUs as you can give it on a single computer (tested to 64 cores). It is designed with speed in mind, and produces a consistent set of output files in a single folder. It can then take a set of Snippy results using the same reference and generate a core SNP alignment (and ultimately a phylogenomic tree).

pydevd

Debugger used by debugpy (command line script)

This is the debugger underlying debugpy, which is used by IPython and Spyder, among others.

snippy

rapid haploid variant calling and core genome alignment

Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. It will find both substitutions (snps) and insertions/deletions (indels). It will use as many CPUs as you can give it on a single computer (tested to 64 cores). It is designed with speed in mind, and produces a consistent set of output files in a single folder. It can then take a set of Snippy results using the same reference and generate a core SNP alignment (and ultimately a phylogenomic tree).