librte-dma-ioat22
Data Plane Development Kit (librte-dma-ioat runtime library)
DPDK is a set of libraries for fast packet processing. Applications run
in user-space and communicate directly with dedicated network interfaces.
librte-eal22
Data Plane Development Kit (librte-eal runtime library)
DPDK is a set of libraries for fast packet processing. Applications run
in user-space and communicate directly with dedicated network interfaces.
python3-json-log-formatter
JSON formatter logging for Python
This library allows one to configure Python logging to
use a JSON formatter.
snippy-examples
rapid haploid variant calling and core genome alignment (examples)
Snippy finds SNPs between a haploid reference genome and your NGS
sequence reads. It will find both substitutions (snps) and
insertions/deletions (indels). It will use as many CPUs as you can give
it on a single computer (tested to 64 cores). It is designed with speed
in mind, and produces a consistent set of output files in a single
folder. It can then take a set of Snippy results using the same
reference and generate a core SNP alignment (and ultimately a
phylogenomic tree).
pydevd
Debugger used by debugpy (command line script)
This is the debugger underlying debugpy, which is used by IPython and
Spyder, among others.
snippy
rapid haploid variant calling and core genome alignment
Snippy finds SNPs between a haploid reference genome and your NGS
sequence reads. It will find both substitutions (snps) and
insertions/deletions (indels). It will use as many CPUs as you can give
it on a single computer (tested to 64 cores). It is designed with speed
in mind, and produces a consistent set of output files in a single
folder. It can then take a set of Snippy results using the same
reference and generate a core SNP alignment (and ultimately a
phylogenomic tree).