r-cran-susier
GNU R sum of single effects linear regression
Implements methods for variable selection in linear
regression based on the "Sum of Single Effects" (SuSiE) model, as
described in Wang et al (2020) <DOI:10.1101/501114>. These methods
provide simple summaries, called "Credible Sets", for accurately
quantifying uncertainty in which variables should be selected.
The methods are motivated by genetic fine-mapping applications,
and are particularly well-suited to settings where variables are
highly correlated and detectable effects are sparse. The fitting
algorithm, a Bayesian analogue of stepwise selection methods
called "Iterative Bayesian Stepwise Selection" (IBSS), is simple
and fast, allowing the SuSiE model be fit to large data sets
(thousands of samples and hundreds of thousands of variables).
sq-wot
Explore the OpenPGP Web of Trust using Sequoia
The "Web of Trust" describes a network of identity assertions
("OpenPGP certifications") and signing delegations ("OpenPGP trust
signatures"), which can be used to formally validate identity
information in a cryptographic certificate.
libblasr5.3.5
tools for aligning PacBio reads to target sequences
Blasr_libcpp is a library used by blasr and other executables such as
samtoh5, loadPulses for analyzing PacBio sequences. This library contains
three sub-libraries, including pbdata, hdf and alignment.
libgeners1
generic serialization library for C++ (shared library)
The Generic Serialization library is designed to address the problem of C++
object persistence in situations where the most typical data access pattern is
"write once read many" (WORM). "Geners" is a set of tools and conventions
which allows its users to develop C++ classes that can be converted to and
from a storable stream of bytes in a well-organized and type-safe manner.
Serialization of STL containers is supported, including the ones added in the
C++11 standard. Independent versioning of each class definition is allowed.
libpcl-apps1.12
Point Cloud Library - apps library
The PCL framework contains numerous state-of-the art algorithms including
filtering, feature estimation, surface reconstruction, registration, model
fitting and segmentation.
libpcl-common1.12
Point Cloud Library - common library
The Point Cloud Library (PCL) is a standalone, large scale, open
project for 2D/3D image and point cloud processing.