r-cran-susier

GNU R sum of single effects linear regression

Implements methods for variable selection in linear regression based on the "Sum of Single Effects" (SuSiE) model, as described in Wang et al (2020) <DOI:10.1101/501114>. These methods provide simple summaries, called "Credible Sets", for accurately quantifying uncertainty in which variables should be selected. The methods are motivated by genetic fine-mapping applications, and are particularly well-suited to settings where variables are highly correlated and detectable effects are sparse. The fitting algorithm, a Bayesian analogue of stepwise selection methods called "Iterative Bayesian Stepwise Selection" (IBSS), is simple and fast, allowing the SuSiE model be fit to large data sets (thousands of samples and hundreds of thousands of variables).

sq-wot

Explore the OpenPGP Web of Trust using Sequoia

The "Web of Trust" describes a network of identity assertions ("OpenPGP certifications") and signing delegations ("OpenPGP trust signatures"), which can be used to formally validate identity information in a cryptographic certificate.

libblasr5.3.5

tools for aligning PacBio reads to target sequences

Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains three sub-libraries, including pbdata, hdf and alignment.

libgeners1

generic serialization library for C++ (shared library)

The Generic Serialization library is designed to address the problem of C++ object persistence in situations where the most typical data access pattern is "write once read many" (WORM). "Geners" is a set of tools and conventions which allows its users to develop C++ classes that can be converted to and from a storable stream of bytes in a well-organized and type-safe manner. Serialization of STL containers is supported, including the ones added in the C++11 standard. Independent versioning of each class definition is allowed.

libpcl-apps1.12

Point Cloud Library - apps library

The PCL framework contains numerous state-of-the art algorithms including filtering, feature estimation, surface reconstruction, registration, model fitting and segmentation.

libpcl-common1.12

Point Cloud Library - common library

The Point Cloud Library (PCL) is a standalone, large scale, open project for 2D/3D image and point cloud processing.