bedtools
suite of utilities for comparing genomic features
The BEDTools utilities allow one to address common genomics tasks such as
finding feature overlaps and computing coverage. The utilities are largely
based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using
BEDTools, one can develop sophisticated pipelines that answer complicated
research questions by streaming several BEDTools together.
root-plugin-gui-guibuilder
GUI editor plug-in for ROOT
lfc-server-postgres
LCG File Catalog (LFC) server with postgres database backend
The LCG File Catalog (LFC) keeps track of the locations of the physical
replicas of the logical files in a distributed storage system.
This package provides an LFC server that uses postgres as its database
backend.
smalt-examples
Sequence Mapping and Alignment Tool (examples)
SMALT efficiently aligns DNA sequencing reads with a reference genome.
Reads from a wide range of sequencing platforms, for example Illumina,
Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including
paired reads.
libghc-numbers-prof
Various number types; profiling libraries
It contains instances of the numerical classes for a variety of
different numbers: (computable) real numbers, arbitrary precision fixed
numbers, arbitrary precision floating point numbers, differentiable
numbers, symbolic numbers, natural numbers, interval arithmetic.
libqt4-private-dev
Qt 4 private development files