r-bioc-drimseq

Differential transcript usage and tuQTL analyses with

Dirichlet-multinomial model in RNA-seq The package provides two frameworks. One for the differential transcript usage analysis between different conditions and one for the tuQTL analysis. Both are based on modeling the counts of genomic features (i.e., transcripts) with the Dirichlet-multinomial distribution. The package also makes available functions for visualization and exploration of the data and results.

node-redux-devtools-core

Live-editing time travel environment for node-redux

Redux DevTools is a live-editing time travel environment for Redux. Features: * inspect every state and action payload * go back in time by “cancelling” actions * if the reducer code change, each “staged” action will be re-evaluated * if the reducers throw, one can see during which action this happened, and what the error was * with `persistState()` store enhancer, one can persist debug sessions across page reloads

fonts-adobe-sourcesans3

Sans serif font family for user interface environments

Source Sans 3 is developed by Paul D. Hunt at Adobe Fonts. It is designed to work well in user interface (UI) environments and draws inspiration from the clarity and legibility of twentieth-century American gothic typeface designs. Prior to 2020 this font was named Source Sans Pro.

r-bioc-s4arrays

foundation of array-like containers in Bioconductor

The S4Arrays package defines the Array virtual class to be extended by other S4 classes that wish to implement a container with an array-like semantic. It also provides: (1) low-level functionality meant to help the developer of such container to implement basic operations like display, subsetting, or coercion of their array-like objects to an ordinary matrix or array, and (2) a framework that facilitates block processing of array-like objects (typically on-disk objects).

r-bioc-rcwl

An R interface to the Common Workflow Language

The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines.

r-bioc-noiseq

Exploratory analysis and differential expression for RNA-seq data

Analysis of RNA-seq expression data or other similar kind of data. Exploratory plots to evualuate saturation, count distribution, expression per chromosome, type of detected features, features length, etc. Differential expression between two experimental conditions with no parametric assumptions.