fitgcp

fitting genome coverage distributions with mixture models

Genome coverage, the number of sequencing reads mapped to a position in a genome, is an insightful indicator of irregularities within sequencing experiments. While the average genome coverage is frequently used within algorithms in computational genomics, the complete information available in coverage profiles (i.e. histograms over all coverages) is currently not exploited to its full extent. Thus, biases such as fragmented or erroneous reference genomes often remain unaccounted for. Making this information accessible can improve the quality of sequencing experiments and quantitative analyses.

libdatetime-event-ical-perl

Perl DateTime extension for computing RFC2445 recurrences

DateTime::Event::ICal is a Perl module that provides convenience methods for easily creating DateTime::Set objects for RFC2445 style recurrences, such as 'last friday of march'.

ipig

integrating PSMs into genome browser visualisations

iPiG targets the integration of peptide spectrum matches (PSMs) from mass spectrometry (MS) peptide identifications into genomic visualisations provided by genome browser such as the UCSC genome browser (http://genome.ucsc.edu/).

php-assetic

Asset Management for PHP

node-lastfm

Read and write to Last.fm - Node.js module

lastfm is a Node.js module which provides API to read and write to users' recent plays on Last.fm.

ruby-hdfeos5

Ruby interface to the HDF-EOS5 library

HDF-EOS5 is a software library designed built on HDF5 to support EOS-specific data structures, namely Grid, Point, and Swath.