fitgcp
fitting genome coverage distributions with mixture models
Genome coverage, the number of sequencing reads mapped to a position in
a genome, is an insightful indicator of irregularities within sequencing
experiments. While the average genome coverage is frequently used within
algorithms in computational genomics, the complete information available
in coverage profiles (i.e. histograms over all coverages) is currently
not exploited to its full extent. Thus, biases such as fragmented or
erroneous reference genomes often remain unaccounted for. Making this
information accessible can improve the quality of sequencing experiments
and quantitative analyses.
libdatetime-event-ical-perl
Perl DateTime extension for computing RFC2445 recurrences
DateTime::Event::ICal is a Perl module that provides convenience methods
for easily creating DateTime::Set objects for RFC2445 style recurrences,
such as 'last friday of march'.
ipig
integrating PSMs into genome browser visualisations
iPiG targets the integration of peptide spectrum matches (PSMs) from
mass spectrometry (MS) peptide identifications into genomic
visualisations provided by genome browser such as the UCSC genome
browser (http://genome.ucsc.edu/).
php-assetic
Asset Management for PHP
node-lastfm
Read and write to Last.fm - Node.js module
lastfm is a Node.js module which provides API to read and write to users'
recent plays on Last.fm.
ruby-hdfeos5
Ruby interface to the HDF-EOS5 library
HDF-EOS5 is a software library designed built on HDF5 to support EOS-specific
data structures, namely Grid, Point, and Swath.