libowasp-esapi-java

Enterprise Security API (ESAPI)

The Enterprise Security API (ESAPI) project is an OWASP project to create simple strong security controls for every web platform. Security controls are not simple to build. You can read about the hundreds of pitfalls for unwary developers on the OWASP web site. By providing developers with a set of strong controls, OWASP aims to eliminate some of the complexity of creating secure web applications.

libgclib2

C++ library to handle biological short sequence data

This is an eclectic gathering of (mostly) C++ code which upstream used for some bioinformatics projects. The main idea is to provide lean code and efficient data structures, trying to avoid too many code dependencies of heavy libraries while minimizing production cycles (and this also implies a decent compile/build time -- looking at you, bloated configure scripts and lengthy compile times of Boost code or other heavy C++ template code..).

ngmlr

CoNvex Gap-cost alignMents for Long Reads

Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.

libdata-uuid-mt-perl

fast random UUID generator using the Mersenne Twister algorithm

Data::UUID::MT provides a UUID generator uses the excellent Math::Random::MT::Auto module as a source of fast, high-quality (pseudo) random numbers.

libfetk1.9

FETK libraries for APBS (shared libraries)

The Finite Element ToolKit (FETK) is a collection of adaptive finite element method (AFEM) software libraries and tools for solving coupled systems of nonlinear geometric partial differential equations (PDE). The FETK libraries and tools are written in an object-oriented form of ANSI-C and in C++, and include a collection of standard numerical libraries (PUNC), a stand-alone high-quality surface and volume simplex mesh generator (GAMer), a stand-alone networked polygon display tool (SG), a general nonlinear finite element modeling kernel (MC)

python3-libhamlib2

Transitional package depending on python3-hamlib

The python3-libhamlib2 package was renamed to python3-hamlib; this package can safely be removed.