lastpass-cli

command line interface to LastPass.com

This application is a command line interface to the LastPass.com services. It brings both better security and convenience by allowing you to access, add, modify, and delete entries in your online LastPass vault, all from the terminal. You can also generate passwords for every server you use and securely store those passwords directly in LastPass. LastPass Enterprise features are supported as well, including Shared Folders.

hxtools

Collection of tools and scripts

A collection of tools and scripts that have accumulated over the years, and each of which seems to be too small to warrants its own project.

pique

software pipeline for performing genome wide association studies

PIQUE is a software pipeline for performing genome wide association studies (GWAS). The main function of PIQUE is to provide ‘convenience’ wrappers that allow users to perform GWAS using the popular program EMMAX (Kang et al., 2010) without the need to be familiar with all of the software tools used to generate the required EMMAX input files. PIQUE will also perform a number of quality control steps prior to running EMMAX, ensuring that the various input data files are in the correct format. PIQUE proceeds in two main stages although there are multiple entry and exit points from which the pipeline can be run. The first stage consists of running the “pique-input” program, which can read genotype and phenotype information in several different formats and generates all the necessary input files required to run EMMAX. The second step in the pipeline uses the “pique-run” program to actually run EMMAX using the files generated by “pique-input” (or pre-existing user-supplied input files) to perform the GWAS and output the analysis summary files.

astro-datareduction

Data reduction pipelines for astronomy

The term data reduction in astronomy means the data processing from the raw exposures up to scientific usable data. This includes the basic CCD processing, the astrometric and photometric calibrations, the reprocessing, error estimation and other steps.

astro-frameworks

Astronomical data analysis frameworks

This metapackage will install large astronomical data analysis frameworks, which usually provide their own script language. Please notice that the Gnu Data Language has its own metapackage astro-gdl, IRAF is in astro-iraf, and the Astropy framework is in the astro-python3 metapackage.

astro-publication

Packages for the publication and presentation of astronomical data

This metapackage will install software for the preparation of astronomical data to publish them in journals or on the web.