ska
Split Kmer Analysis
SKA (Split Kmer Analysis) is a toolkit for prokaryotic (and any other
small, haploid) DNA sequence analysis using split kmers. A split kmer is
a pair of kmers in a DNA sequence that are separated by a single base.
Split kmers allow rapid comparison and alignment of small genomes, and
is particulalry suited for surveillance or outbreak investigation. SKA
can produce split kmer files from fasta format assemblies or directly
from fastq format read sequences, cluster them, align them with or
without a reference sequence and provide various comparison and summary
statistics. Currently all testing has been carried out on high-quality
Illumina read data, so results for other platforms may vary.
librte-mbuf23
Data Plane Development Kit (librte-mbuf2 runtime library)
DPDK is a set of libraries for fast packet processing. Applications run
in user-space and communicate directly with dedicated network interfaces.
udisks2-zram
zram support for udisks2
The udisks daemon serves as an interface to system block devices,
implemented via D-Bus. It handles operations such as querying, mounting,
unmounting, formatting, or detaching storage devices such as hard disks
or USB thumb drives.
libx32go21-amd64-cross
Runtime library for GNU Go applications (x32)
Library needed for GNU Go applications linked against the
shared library.
librte-member23
Data Plane Development Kit (librte-member runtime library)
DPDK is a set of libraries for fast packet processing. Applications run
in user-space and communicate directly with dedicated network interfaces.
librte-mempool-octeontx23
Data Plane Development Kit (librte-mempool-octeontx runtime library)
DPDK is a set of libraries for fast packet processing. Applications run
in user-space and communicate directly with dedicated network interfaces.