ska

Split Kmer Analysis

SKA (Split Kmer Analysis) is a toolkit for prokaryotic (and any other small, haploid) DNA sequence analysis using split kmers. A split kmer is a pair of kmers in a DNA sequence that are separated by a single base. Split kmers allow rapid comparison and alignment of small genomes, and is particulalry suited for surveillance or outbreak investigation. SKA can produce split kmer files from fasta format assemblies or directly from fastq format read sequences, cluster them, align them with or without a reference sequence and provide various comparison and summary statistics. Currently all testing has been carried out on high-quality Illumina read data, so results for other platforms may vary.

librte-mbuf23

Data Plane Development Kit (librte-mbuf2 runtime library)

DPDK is a set of libraries for fast packet processing. Applications run in user-space and communicate directly with dedicated network interfaces.

udisks2-zram

zram support for udisks2

The udisks daemon serves as an interface to system block devices, implemented via D-Bus. It handles operations such as querying, mounting, unmounting, formatting, or detaching storage devices such as hard disks or USB thumb drives.

libx32go21-amd64-cross

Runtime library for GNU Go applications (x32)

Library needed for GNU Go applications linked against the shared library.

librte-member23

Data Plane Development Kit (librte-member runtime library)

DPDK is a set of libraries for fast packet processing. Applications run in user-space and communicate directly with dedicated network interfaces.

librte-mempool-octeontx23

Data Plane Development Kit (librte-mempool-octeontx runtime library)

DPDK is a set of libraries for fast packet processing. Applications run in user-space and communicate directly with dedicated network interfaces.