r-bioc-affxparser
Affymetrix File Parsing SDK
Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It
provides methods for fast and memory efficient parsing of Affymetrix
files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based
files are supported. Currently, there are methods for reading chip
definition file (CDF) and a cell intensity file (CEL). These files can
be read either in full or in part. For example, probe signals from a few
probesets can be extracted very quickly from a set of CEL files into a
convenient list structure.
r-bioc-basilisk
freezing Python dependencies inside Bioconductor packages
Installs a self-contained conda instance that is managed by the
R/Bioconductor installation machinery. This aims to provide a consistent
Python environment that can be used reliably by Bioconductor packages.
Functions are also provided to enable smooth interoperability of
multiple Python environments in a single R session.
r-bioc-noiseq
Exploratory analysis and differential expression for RNA-seq data
Analysis of RNA-seq expression data or other similar kind of data.
Exploratory plots to evualuate saturation, count distribution,
expression per chromosome, type of detected features, features length,
etc. Differential expression between two experimental conditions with
no parametric assumptions.
r-bioc-rcwl
An R interface to the Common Workflow Language
The Common Workflow Language (CWL) is an open standard for development
of data analysis workflows that is portable and scalable across
different tools and working environments. Rcwl provides a simple way to
wrap command line tools and build CWL data analysis pipelines
programmatically within R. It increases the ease of usage, development,
and maintenance of CWL pipelines.
r-bioc-s4arrays
foundation of array-like containers in Bioconductor
The S4Arrays package defines the Array virtual class to be
extended by other S4 classes that wish to implement a container
with an array-like semantic. It also provides: (1) low-level
functionality meant to help the developer of such container to
implement basic operations like display, subsetting, or coercion
of their array-like objects to an ordinary matrix or array, and
(2) a framework that facilitates block processing of array-like
objects (typically on-disk objects).
fonts-adobe-sourcesans3
Sans serif font family for user interface environments
Source Sans 3 is developed by Paul D. Hunt at Adobe Fonts. It is designed to
work well in user interface (UI) environments and draws inspiration from the
clarity and legibility of twentieth-century American gothic typeface designs.
Prior to 2020 this font was named Source Sans Pro.