ring-daemon

transitional package for jami-daemon

This is a transitional package. It can safely be removed.

seccure

tools for using algorithms based on elliptic curve cryptography (ECC)

The seccure toolset implements a selection of asymmetric algorithms based on elliptic curve cryptography (ECC). In particular, it offers public key encryption / decryption and signature generation / verification. ECC schemes offer a much better key size to security ratio than classical systems (RSA, DSA). Keys are short enough to make direct specification of keys on the command line possible (sometimes this is more convenient than the management of PGP-like key rings). seccure builds on this feature and therefore is the tool of choice whenever lightweight asymmetric cryptography -- independent of key servers, revocation certificates, the Web of Trust, or even configuration files -- is required.

indigo-utils

Organic Chemistry Toolkit Utilities

Indigo is a C++ based organic chemistry and cheminformatics software environment. Features Include:

brig

BLAST Ring Image Generator

BRIG can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. * Images show similarity between a central reference sequence and other sequences as concentric rings. * BRIG will perform all BLAST comparisons and file parsing automatically via a simple GUI. * Contig boundaries and read coverage can be displayed for draft genomes; customized graphs and annotations can be displayed. * Using a user-defined set of genes as input, BRIG can display gene presence, absence, truncation or sequence variation in a set of complete genomes, draft genomes or even raw, unassembled sequence data. * BRIG also accepts SAM-formatted read-mapping files enabling genomic regions present in unassembled sequence data from multiple samples to be compared simultaneously

python3-shapely

geometric objects, predicates, and operations (Python 3)

Shapely is a package for manipulation and analysis of 2D features. Its capabilities include: * calculating the point set unions, intersections, or differences of features * predicate tests on features: intersects, touches, contains, and more.

gap-core

GAP computer algebra system, core components

GAP is a system for computational discrete algebra, with particular emphasis on Computational Group Theory. GAP provides a programming language, a library of thousands of functions implementing algebraic algorithms written in the GAP language as well as large data libraries of algebraic objects. GAP is used in research and teaching for studying groups and their representations, rings, vector spaces, algebras, combinatorial structures, and more.