ring-daemon
transitional package for jami-daemon
This is a transitional package. It can safely be removed.
seccure
tools for using algorithms based on elliptic curve cryptography (ECC)
The seccure toolset implements a selection of asymmetric algorithms
based on elliptic curve cryptography (ECC). In particular, it offers
public key encryption / decryption and signature generation /
verification. ECC schemes offer a much better key size to security
ratio than classical systems (RSA, DSA). Keys are short enough to make
direct specification of keys on the command line possible (sometimes
this is more convenient than the management of PGP-like key
rings). seccure builds on this feature and therefore is the tool of
choice whenever lightweight asymmetric cryptography -- independent of
key servers, revocation certificates, the Web of Trust, or even
configuration files -- is required.
indigo-utils
Organic Chemistry Toolkit Utilities
Indigo is a C++ based organic chemistry and cheminformatics software
environment. Features Include:
brig
BLAST Ring Image Generator
BRIG can display circular comparisons between a large number of genomes,
with a focus on handling genome assembly data.
* Images show similarity between a central reference sequence and other
sequences as concentric rings.
* BRIG will perform all BLAST comparisons and file parsing automatically
via a simple GUI.
* Contig boundaries and read coverage can be displayed for draft genomes;
customized graphs and annotations can be displayed.
* Using a user-defined set of genes as input, BRIG can display gene
presence, absence, truncation or sequence variation in a set of
complete genomes, draft genomes or even raw, unassembled sequence data.
* BRIG also accepts SAM-formatted read-mapping files enabling genomic
regions present in unassembled sequence data from multiple samples to
be compared simultaneously
python3-shapely
geometric objects, predicates, and operations (Python 3)
Shapely is a package for manipulation and analysis of 2D features.
Its capabilities include:
* calculating the point set unions, intersections, or differences of features
* predicate tests on features: intersects, touches, contains, and more.
gap-core
GAP computer algebra system, core components
GAP is a system for computational discrete algebra, with particular emphasis
on Computational Group Theory. GAP provides a programming language, a library
of thousands of functions implementing algebraic algorithms written in the GAP
language as well as large data libraries of algebraic objects. GAP is used in
research and teaching for studying groups and their representations, rings,
vector spaces, algebras, combinatorial structures, and more.