multiple alignment of protein sequences

proda

multiple alignment of protein sequences

ProDA is a system for automated detection and alignment of homologous regions in collections of proteins with arbitrary domain architectures. Given an input set of unaligned sequences, ProDA identifies all homologous regions appearing in one or more sequences, and returns a collection of local multiple alignments for these regions.
Makefile generator for Java programs

mmake

Makefile generator for Java programs

mmake will generate a master Makefile for your Java programs. This generated Makefile fully understands the subdirectories that are required if your program consists of multiple packages. mmake also automatically generates dependencies, and can use the C preprocessor for Java programs and generate javadoc documentation. mmake defaults to using Sun's javac from the jdk but can easily use guavac or a different GPL alternative as well.
GUI configuration tool for doxygen

doxygen-gui

GUI configuration tool for doxygen

Doxygen is a documentation system for C++, C, Objective-C, C#, PHP, Java, Python, IDL, Fortran, VHDL and to some extent D. It can generate an on-line documentation browser (in HTML) and/or an off-line reference manual (in LaTeX) from a set of annotated source files.
office productivity suite -- word processor

openoffice.org-writer

office productivity suite -- word processor

Boat racing game

bloboats

Boat racing game

Bloboats is an arcade-like boat racing game in the hybrid spirit of Mario-like platform jumpers and elasto mania / xmoto.
spinning 3D object that shows the current CPU load

wmcube

spinning 3D object that shows the current CPU load

wmcube is a dockapp that displays a realtime rotating 3D object which indicates current CPU load. The higher the load, the faster the object spins. On SMP machines one instance can be run for each processor.