libopenbabel7

Chemical toolbox library

Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It allows one to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. Features include:

python3-pauvre

QC and genome browser plotting Oxford Nanopore and PacBio long reads

Pauvre is a plotting package designed for nanopore and PacBio long reads.

wys

daemon to start/stop PulseAudio loopbacks for phone call audio

During a phone call, audio must be streamed from one ALSA device to another ALSA device. This should only happen during the call, when the modem's audio interfaces will actually be active. To facilitate this, Wys will wait for ModemManager calls in the ringing or active state and enable appropriate PulseAudio loopback modules only during those states.

libsimtkmolmodel3.0

C++ API for creating molecular models for SimTK

Provides C++ API for creating molecular models whose dynamics can be simulated using the SimTK Simbody library. Molmodel is a programmer's toolkit for building reduced-coordinate, yet still all-atom, models of large biopolymers such as proteins, RNA, and DNA. One can control the allowed mobility. By default, Molmodel builds torsion-coordinate models in which bond stretch and bend angles are rigid while bond torsion angles are mobile. But one is able to rigidify or free any subsets of the atoms, such as the rigid benzene ring.

elpa-macaulay2

Software system for algebraic geometry research (Emacs package)

Macaulay 2 is a software system for algebraic geometry research, written by Daniel R. Grayson and Michael E. Stillman. Based on Groebner bases, it provides algorithms for computing homological invariants of rings and modules.

macaulay2

Software system for algebraic geometry research

Macaulay 2 is a software system for algebraic geometry research, written by Daniel R. Grayson and Michael E. Stillman. Based on Groebner bases, it provides algorithms for computing homological invariants of rings and modules.