r-bioc-biocneighbors

Nearest Neighbor Detection for Bioconductor Packages

Implements exact and approximate methods for nearest neighbor detection, in a framework that allows them to be easily switched within Bioconductor packages or workflows. Exact searches can be performed using the k-means for k-nearest neighbors algorithm or with vantage point trees. Approximate searches can be performed using the Annoy or HNSW libraries. Searching on either Euclidean or Manhattan distances is supported. Parallelization is achieved for all methods by using BiocParallel. Functions are also provided to search for all neighbors within a given distance.

libn32gomp1-mipsr6-cross

GCC OpenMP (GOMP) support library (n32)

GOMP is an implementation of OpenMP for the C, C++, and Fortran compilers in the GNU Compiler Collection.

r-bioc-singler

BioConductor reference-based single-cell RNA-Seq annotation

Performs unbiased cell type recognition from single-cell RNA sequencing data, by leveraging reference transcriptomic datasets of pure cell types to infer the cell of origin of each single cell independently.

libparsington-java

mathematical expression parser for Java

Parsington is an infix-to-postfix (or infix-to-syntax-tree) expression parser for mathematical expressions written in Java. It is simple yet fancy, handling (customizable) operators, functions, variables and constants in a similar way to what the Java language itself supports.

r-cran-ddrtree

GNU R learning principal graphs with DDRTree

Provides an implementation of the framework of reversed graph embedding (RGE) which projects data into a reduced dimensional space while constructs a principal tree which passes through the middle of the data simultaneously. DDRTree shows superiority to alternatives (Wishbone, DPT) for inferring the ordering as well as the intrinsic structure of the single cell genomics data. In general, it could be used to reconstruct the temporal progression as well as bifurcation structure of any datatype.

r-cran-upsetr

GNU R visualization of intersecting sets

Creates visualizations of intersecting sets using a novel matrix design, along with visualizations of several common set, element and attribute related tasks.