libpreludedb7t64

Security Information and Events Management System [ Base library ]

The PreludeDB Library provides an abstraction layer upon the type and the format of the database used to store IDMEF alerts. It allows developers to use the Prelude IDMEF database easily and efficiently without worrying about SQL, and to access the database independently of the type/format of the database.

libcatmandu-xls-perl

modules for working with Excel files within the Catmandu framework

Catmandu::XLS provides modules for working with Excel .xls and .xlsx files within the Catmandu framework.

pscan-chip

ChIP-based identifcation of TF binding sites

Regulation of transcription is one of the main check points of gene expression regulation and plays a key role in fundamental processes like cellular differentiation and dynamic molecular responses to stimuli The transcriptional activity of genes is finely regulated by the interaction of sequence elements on the DNA (transcription factor binding sites or TFBSs) and particular proteins called Transcription Factors (TFs). , TFBSs are usually clustered in specific regulatory genomic regions called promoters and enhancers. TFs usually recognize TFBSs in a loose sequence specific fashion but there is no computational way to determine if any given sequence motif on the DNA is actually bound in-vivo by a TF, even when the motif is an istance of the sequences typically bound by the TF itself.

liblwres161

Lightweight Resolver Library used by BIND

The Berkeley Internet Name Domain (BIND) implements an Internet domain name server. BIND is the most widely-used name server software on the Internet, and is supported by the Internet Software Consortium, www.isc.org.

pscan-tfbs

search for transcription factor binding sites

Pscan finds Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes.

soapsnp

resequencing utility that can assemble consensus sequence of genomes

For getting ideas on the cause of diseases or their response to therapy, and for understanding either for a particular patient, doctors around the globe are starting to look at the genes or the whole genome and how that sequence is different from a healthy / well responding individual.