libcod-cif-parser-yapp-perl

error-correcting CIF parser - pure Perl implementation

ess

Transition Package, ess to elpa-ess

The ESS addon package for Emacs has been elpafied. This dummy package helps ease transition from ess to elpa-ess.

fortunes-eo-ascii

Collection of esperanto fortunes (ascii encoding).

Datumbazo kun esperantlingvaj mesagxoj por la fortune programo. Enhavas mesagxojn el Proverbaro Esperanta de Zamenhof, en ASCII (post-x) kodo.

gff2aplot

pair-wise alignment-plots for genomic sequences in PostScript

A program to visualize the alignment of two genomic sequences together with their annotations. From GFF-format input files it produces PostScript figures for that alignment. The following menu lists many features of gff2aplot: * Comprehensive alignment plots for any GFF-feature. Attributes are defined separately so you can modify only whatsoever attributes for a given file or share same customization across different data-sets. * All parameters are set by default within the program, but it can be also fully configured via gff2ps-like flexible customization files. Program can handle several of such files, summarizing all the settings before producing the corresponding figure. Moreover, all customization parameters can be set via command-line switches, which allows users to play with those parameters before adding any to a customization file. * Source order is taken from input files, if you swap file order you can visualize alignment and its annotation with the new input arrangement. * All alignment scores can be visualized in a PiP box below gff2aplot area, using grey-color scale, user-defined color scale or score-dependent gradients. * Scalable fonts, which can also be chosen among the basic PostScript default fonts. Feature and group labels can be rotated to improve readability in both annotation axes. * The program is still defined as a Unix filter so it can handle data from files, redirections and pipes, writing output to standard-output and warnings to standard error. * gff2aplot is able to manage many physical page formats (from A0 to A10, and more -see available page sizes in its manual-), including user-defined ones. This allows, for instance, the generation of poster size genomic maps, or the use of a continuous-paper supporting plotting device, either in portrait or landscape. * You can draw different alignments on same alignment plot and distinguish them by using different colors for each. * Shape dictionary has been expanded, so that further feature shapes are now available (see manual). * Annotation projections through alignment plots (so called ribbons) emulate transparencies via complementary color fill patterns. This feature allows one to show color pseudo-blending when horizontal and vertical ribbons overlap.

ocamlwc

count the lines of code and comments in OCaml sources

ocamlwc is a program to count the number of lines of code and documentation in OCaml sources. It assumes the files to be lexically well-formed.

erlang-base-hipe

Erlang/OTP HiPE enabled virtual machine and base applications

This package contains the Erlang/OTP runtime implementation, which is configured and built with HiPE support (allows compiling to native code), and minimal set of Erlang applications: compiler - compiles Erlang code to byte-code; erts - the Erlang runtime system application; kernel - code necessary to run the Erlang runtime system itself; ose - code for Enea OSE operating system; sasl - the system architecture support libraries application; stdlib - modules for manipulating lists, strings, files etc.