clonalframeml
Efficient Inference of Recombination in Whole Bacterial Genomes
ClonalFrameML is a software package that performs efficient inference of
recombination in bacterial genomes. ClonalFrameML was created by Xavier
Didelot and Daniel Wilson. ClonalFrameML can be applied to any type of
aligned sequence data, but is especially aimed at analysis of whole
genome sequences. It is able to compare hundreds of whole genomes in a
matter of hours on a standard Desktop computer. There are three main
outputs from a run of ClonalFrameML: a phylogeny with branch lengths
corrected to account for recombination, an estimation of the key
parameters of the recombination process, and a genomic map of where
recombination took place for each branch of the phylogeny.
merecat
Embedded web server
This is a simple web server based on Jef Poskanzer's thttpd.
It supports all basic features required for most use-cases. The
most prominent features are probably HTTPS, using OpenSSL, PHP,
multiple servers with HTTP redirect support, redirect from HTTP
to HTTPS, virtual hosts, and the URL-traffic-based throttling.
php-symfony-polyfill
Symfony polyfills backporting features to lower PHP versions
The Symfony Polyfill project backports features found in the latest PHP
versions and provides compatibility layers for some extensions and functions.
It is intended to be used when portability across PHP versions and extensions
is desired.
node-prosemirror-view
ProseMirror's view component
This is a core module of ProseMirror. ProseMirror is a well-behaved rich
semantic content editor based on contentEditable, with support for
collaborative editing
and custom document schemas.
g++-12-multilib
GNU C++ compiler (multilib support)
This is the GNU C++ compiler, a fairly portable optimizing compiler for C++.
node-typanion
Static and runtime type assertion library with no dependencies
Compared to yup, Typanion has a better inference support for TypeScript.