mlpack-bin
intuitive, fast, scalable C++ machine learning library (binaries)
This package contains example binaries using the mlpack Library.
kgames
Venerable selection of Xaw-based games
These are a selection of various games that use the Xaw toolkit. They
are all from the 80's and 90's and look the part. As a result, they
are also very lightweight. There are a bunch of solitaire (patience)
variants, mille bournes, cribbage and dominos.
libpicard-java
Java library to manipulate SAM and BAM files
SAM (Sequence Alignment/Map) format is a generic format for storing
large nucleotide sequence alignments. This library provides classes to
manipulate SAM and BAM files.
picard-tools
Command line tools to manipulate SAM and BAM files
SAM (Sequence Alignment/Map) format is a generic format for storing
large nucleotide sequence alignments. Picard Tools includes these
utilities to manipulate SAM and BAM files:
AddCommentsToBam FifoBuffer
AddOrReplaceReadGroups FilterSamReads
BaitDesigner FilterVcf
BamIndexStats FixMateInformation
GatherBamFiles
BedToIntervalList GatherVcfs
BuildBamIndex GenotypeConcordance
CalculateHsMetrics IlluminaBasecallsToFastq
CalculateReadGroupChecksum IlluminaBasecallsToSam
CheckIlluminaDirectory LiftOverIntervalList
CheckTerminatorBlock LiftoverVcf
CleanSam MakeSitesOnlyVcf
CollectAlignmentSummaryMetrics MarkDuplicates
CollectBaseDistributionByCycle MarkDuplicatesWithMateCigar
CollectGcBiasMetrics MarkIlluminaAdapters
CollectHiSeqXPfFailMetrics MeanQualityByCycle
CollectIlluminaBasecallingMetrics MergeBamAlignment
CollectIlluminaLaneMetrics MergeSamFiles
CollectInsertSizeMetrics MergeVcfs
CollectJumpingLibraryMetrics NormalizeFasta
CollectMultipleMetrics PositionBasedDownsampleSam
CollectOxoGMetrics QualityScoreDistribution
CollectQualityYieldMetrics RenameSampleInVcf
CollectRawWgsMetrics ReorderSam
CollectRnaSeqMetrics ReplaceSamHeader
CollectRrbsMetrics RevertOriginalBaseQualitiesAndAddMateCigar
CollectSequencingArtifactMetrics RevertSam
CollectTargetedPcrMetrics SamFormatConverter
CollectVariantCallingMetrics SamToFastq
CollectWgsMetrics ScatterIntervalsByNs
CompareMetrics SortSam
CompareSAMs SortVcf
ConvertSequencingArtifactToOxoG SplitSamByLibrary
CreateSequenceDictionary SplitVcfs
DownsampleSam UpdateVcfSequenceDictionary
EstimateLibraryComplexity ValidateSamFile
ExtractIlluminaBarcodes VcfFormatConverter
ExtractSequences VcfToIntervalList
FastqToSam ViewSam
python3-configshell-fb
Python library for building configuration shells - Python 3
The configshell-fb package is a Python library that provides a
framework for building simple but nice CLI-based applications.
libpdl-ccs-perl
module to provide various utilities for PDL CSS
PDL::CCS is a wrapper package which pulls in a number of submodules dealing
with sparse structures. It provides means of handling large sparse
n-dimensional structures in an optimized way and some low-level utilities
permitting to operate on them.