smrtanalysis
software suite for single molecule, real-time sequencing
SMRT® Analysis is a powerful, open-source bioinformatics software suite
available for analysis of DNA sequencing data from Pacific Biosciences’
SMRT technology. Users can choose from a variety of analysis protocols that
utilize PacBio® and third-party tools. Analysis protocols include de novo
genome assembly, cDNA mapping, DNA base-modification detection, and
long-amplicon analysis to determine phased consensus sequences.
python3-torch-cuda
Tensors and Dynamic neural networks in Python (Python Interface)
PyTorch is a Python package that provides two high-level features:
sift
predicts if a substitution in a protein has a phenotypic effect
SIFT is a sequence homology-based tool that sorts intolerant from tolerant
amino acid substitutions and predicts whether an amino acid substitution
in a protein will have a phenotypic effect. SIFT is based on the premise
that protein evolution is correlated with protein function. Positions
important for function should be conserved in an alignment of the protein
family, whereas unimportant positions should appear diverse in an alignment.
libreproc14
Cross-platform C99/C++11 process library (C library)
reproc (Redirected Process) is a cross-platform C/C++ library that simplifies
starting, stopping and communicating with external programs. The main use case
is executing command line applications directly from C or C++ code and
retrieving their output.
apt-swarm
Experimental p2p gossip network for OpenPGP signature transparency
Tracks and records observed signed Release files while exchanging data within
an authority-less peer-to-peer transparency network. Observed documents are
stored in a database optimized for fast prefix-based lookups and organized into
an append-only tree for efficient synchronization over the network.
dovecot-fts-flatcurve
Dovecot full-text search plugin using the Xapian engine
This is a Dovecot Full Text Search (FTS) plugin to enable message indexing
using the Xapian Open Source Search Engine Library.