Probabilistic Alignment Kit for DNA, codon and amino-acid sequences

prank

Probabilistic Alignment Kit for DNA, codon and amino-acid sequences

PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It's based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences.
Tryton application platform - timesheet module

tryton-modules-timesheet

Tryton application platform - timesheet module

Tryton is a high-level general purpose application platform. It is the base of a complete business solution as well as a comprehensive health and hospital information system (GNUHealth).
graphical boot animation and logger - spinfinity theme

plymouth-theme-spinfinity

graphical boot animation and logger - spinfinity theme

transitional dummy package

ptop

transitional dummy package

This is a transitional dummy package. It can safely be removed. ptop is replaced by pgtop
open files with a minimum number of keystrokes

vim-command-t

open files with a minimum number of keystrokes

Files are selected by typing characters that appear in their paths, and are ordered by an algorithm which knows that characters that appear in certain locations (for example, immediately after a path separator) should be given more weight.
determine which of two given jpegs (same size) is the original

jpegjudge

determine which of two given jpegs (same size) is the original

Try to determine which same picture was saved at a higher quality, even if the picture was saved at low quality and later at a higher quality.