snippy-examples

rapid haploid variant calling and core genome alignment (examples)

Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. It will find both substitutions (snps) and insertions/deletions (indels). It will use as many CPUs as you can give it on a single computer (tested to 64 cores). It is designed with speed in mind, and produces a consistent set of output files in a single folder. It can then take a set of Snippy results using the same reference and generate a core SNP alignment (and ultimately a phylogenomic tree).

libqtsql4-perl

perl bindings for the Qt Sql library

nodm

automatic display manager

This package prepares the system to automatically start an X session at system boot. It is meant for devices like smartphones, but can be used on a regular computer as well, if the security implications are acceptable.

php5-pspell

pspell module for php5

This package provides a module for pspell functions in PHP scripts.

python-argvalidate

simple argument validator library

python-argvalidate provides developers with a simple way of doing type-checking for both Python functions and methods.

python-sendfile

Python interface to sendfile(2)

Python library which provides a "zero-copy" way of copying data from one file descriptor to another (a socket). The phrase "zero-copy" refers to the fact that all of the copying of data between the two descriptors is done entirely by the kernel, with no copying of data into userspace buffers. This is particularly useful when sending a file over a socket (e.g. FTP).