puppet-beaker

test harness providing platform abstraction and VM provisioning

Test harness focused on acceptance testing via interactions between multiple (virtual) machines. It provides platform abstraction between different Systems Under Test (SUTs), and it can also be used as a virtual machine provisioner - setting up machines, running any commands on those machines, and then exiting.

gobjc++-8-multilib-mips64el-linux-gnuabi64

GNU Objective-C++ compiler (multilib support)

x2gobroker-agent

X2Go Session Broker (remote agent)

X2Go is a server based computing environment with - session resuming - low bandwidth support - session brokerage support - client side mass storage mounting support - client side printing support - audio support - authentication by smartcard and USB stick

libqt53d5-gles

Qt 3D module - OpenGLES

gobjc++-8-mips64el-linux-gnuabi64

GNU Objective-C++ compiler

kallisto

near-optimal RNA-Seq quantification

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.