meep-mpi-default

software package for FDTD simulation, parallel version

Meep is a free and open-source software package for electromagnetics simulation via the finite-difference time-domain (FDTD) method.

monitoring-plugins-check-logfiles

Nagios plugin check_logfiles

check_logfiles: Plugin for Nagios which scans log files for specific patterns. Features: - Detection of rotations - usually nightly logfiles are rotated and compressed. Each operating system or company has it’s own naming scheme. If this rotation is done between two runs of check_logfiles also the rotated archive has to be scanned to avoid gaps. The most common rotation schemes are predefined but you can describe any strategy (shortly: where and under which name is a logfile archived). - More than one pattern can be defined which again can be classified as warning patterns and critical patterns. - Triggered actions - Usually nagios plugins return just an exit code and a line of text, describing the result of the check. Sometimes, however, you want to run some code during the scan every time you got a hit. Check_logfiles lets you call scripts either after every hit or at the beginning or the end of it’s runtime. - Exceptions - If a pattern matches, the matched line could be a very special case which should not be counted as an error. You can define exception patterns which are more specific versions of your critical/warning patterns. Such a match would then cancel an alert. - Thresholds - You can define the number of matching lines which are necessary to activate an alert. - Protocol - The matching lines can be written to a protocol file the name of which will be included in the plugin’s output. - Macros - Pattern definitions and logfile names may contain macros, which are resolved at runtime. - Performance data - The number of lines scanned and the number of warnings/criticals is output. - Windows - The plugin works with Unix as well as with Windows (e.g. with ActiveState Perl).

musescore-general-soundfont

General SoundFont from MuseScore (HQ version, lossy)

This is the HQ version for the new standard hard disc space-saving SF3 format soundfont as shipped with MuseScore 2.2 and newer.

ray

de novo genome assemblies of next-gen sequencing data

Ray is a parallel software that computes de novo genome assemblies with next-generation sequencing data. Ray is written in C++ and can run in parallel on numerous interconnected computers using the message-passing interface (MPI) standard. Included: - Ray de novo assembly of single genomes - Ray Méta de novo assembly of metagenomes - Ray Communities microbe abundance + taxonomic profiling - Ray Ontologies gene ontology profiling
Multiple selection/cursor and menu prompt

kakoune

Vim-inspired, selection-oriented code editor

Kakoune is a code editor heavily inspired by Vim; as such most of its commands are similar to vi’s ones, and it shares Vi’s "keystrokes as a text editing language" model. Kakoune can operate in two modes, normal and insertion. In insertion mode, keys are directly inserted into the current buffer. In normal mode, keys are used to manipulate the current selection and to enter insertion mode. Kakoune has a strong focus on interactivity, most commands provide immediate and incremental results, while still being competitive (as in keystroke count) with Vim. Kakoune works on selections, which are oriented, inclusive range of characters; selections have an anchor and a cursor character. Most commands move both of them, except when extending selection where the anchor character stays fixed and the cursor one moves around.

makefs

create a cd9660 or ffs filesystem image from a directory tree

NetBSD® makefs(8) creates a filesystem image from a directory tree without the need for superuser privileges. The MirBSD version fixes ECMA 119, SUSP and RRIP (Rock Ridge) compliance and adds features.