meep-mpi-default
software package for FDTD simulation, parallel version
Meep is a free and open-source software package for electromagnetics
simulation via the finite-difference time-domain (FDTD) method.
monitoring-plugins-check-logfiles
Nagios plugin check_logfiles
check_logfiles: Plugin for Nagios which scans log files for specific patterns.
Features:
- Detection of rotations - usually nightly logfiles are rotated and
compressed. Each operating system or company has it’s own naming
scheme. If this rotation is done between two runs of check_logfiles
also the rotated archive has to be scanned to avoid gaps. The most
common rotation schemes are predefined but you can describe any
strategy (shortly: where and under which name is a logfile
archived).
- More than one pattern can be defined which again can be classified
as warning patterns and critical patterns.
- Triggered actions - Usually nagios plugins return just an exit code
and a line of text, describing the result of the check. Sometimes,
however, you want to run some code during the scan every time you
got a hit. Check_logfiles lets you call scripts either after every
hit or at the beginning or the end of it’s runtime.
- Exceptions - If a pattern matches, the matched line could be a very
special case which should not be counted as an error. You can
define exception patterns which are more specific versions of your
critical/warning patterns. Such a match would then cancel an alert.
- Thresholds - You can define the number of matching lines which are
necessary to activate an alert.
- Protocol - The matching lines can be written to a protocol file the
name of which will be included in the plugin’s output.
- Macros - Pattern definitions and logfile names may contain macros,
which are resolved at runtime.
- Performance data - The number of lines scanned and the number of
warnings/criticals is output.
- Windows - The plugin works with Unix as well as with Windows
(e.g. with ActiveState Perl).
musescore-general-soundfont
General SoundFont from MuseScore (HQ version, lossy)
This is the HQ version for the new standard hard disc space-saving
SF3 format soundfont as shipped with MuseScore 2.2 and newer.
ray
de novo genome assemblies of next-gen sequencing data
Ray is a parallel software that computes de novo genome assemblies with
next-generation sequencing data.
Ray is written in C++ and can run in parallel on numerous interconnected
computers using the message-passing interface (MPI) standard.
Included:
- Ray de novo assembly of single genomes
- Ray Méta de novo assembly of metagenomes
- Ray Communities microbe abundance + taxonomic profiling
- Ray Ontologies gene ontology profiling
kakoune
Vim-inspired, selection-oriented code editor
Kakoune is a code editor heavily inspired by Vim; as such most of its
commands are similar to vi’s ones, and it shares Vi’s "keystrokes as
a text editing language" model. Kakoune can operate in two modes, normal
and insertion. In insertion mode, keys are directly inserted into
the current buffer. In normal mode, keys are used to manipulate
the current selection and to enter insertion mode. Kakoune has a strong
focus on interactivity, most commands provide immediate and incremental
results, while still being competitive (as in keystroke count) with Vim.
Kakoune works on selections, which are oriented, inclusive range of
characters; selections have an anchor and a cursor character.
Most commands move both of them, except when extending selection where
the anchor character stays fixed and the cursor one moves around.
makefs
create a cd9660 or ffs filesystem image from a directory tree
NetBSD® makefs(8) creates a filesystem image from a directory tree
without the need for superuser privileges. The MirBSD version fixes
ECMA 119, SUSP and RRIP (Rock Ridge) compliance and adds features.