tophat-recondition

post-processor for TopHat unmapped reads

tophat-recondition is a post-processor for TopHat unmapped reads (contained in unmapped.bam), making them compatible with downstream tools (e.g., the Picard suite, samtools, GATK) (TopHat issue #17). It also works around bugs in TopHat:

r-cran-ica

Independent Component Analysis

Independent Component Analysis (ICA) using various algorithms: FastICA, Information-Maximization (Infomax), and Joint Approximate Diagonalization of Eigenmatrices (JADE).

libbtparse2

C library to parse BibTeX files

btparse is the C component of btOOL, a pair of libraries for parsing and processing BibTeX files. It is built on top of a lexical analyzer and parser constructed using PCCTS. The library provides entry points to the parser, functions to traverse and query the abstract-syntax tree that it produces, and some functions for processing strings in "the BibTeX way".

kdeplasma-applets-xrdesktop

xrdesktop applet for KDE Plasma

This package contains xrdesktop applet for KDE Plasma.

thunarx-python

Python bindings for the Thunar file manager

Python bindings for the Thunar file manager, allowing property page and menu extensions to be written in Python.

libzip4j-java

java library for zip files

Features: * Create, Add, Extract, Update, Remove files from a Zip file * Read/Write password protected Zip files * AES 128/256 Encryption/Decryption * Standard Zip Encryption/Decryption * Zip64 format * Store (No Compression) and Deflate compression method * Create or extract files from Split Zip files (Ex: z01, z02,...zip) * Unicode file names * Progress Monitor