alien-hunter

Interpolated Variable Order Motifs to identify horizontally acquired DNA

Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif distributions and captures more reliably the local composition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state 2nd order Hidden Markov Model (HMM), in a change-point detection framework, to optimize the localization of the boundaries of the predicted regions. The predictions (embl format) can be automatically loaded into Artemis genome viewer freely available at: http://www.sanger.ac.uk/Software/Artemis/.

ucarp

user-space replacement to VRRP automatic IP fail-over

UCARP allows a pair of hosts to share common virtual IP addresses in order to provide automatic fail-over. It is a portable user-land implementation of the secure and patent-free Common Address Redundancy Protocol (CARP, OpenBSD's alternative to the VRRP).

gccgo-multilib-s390x-linux-gnu

Go compiler (based on GCC) for the s390x architecture

This is the GNU Go compiler, which compiles Go on platforms supported by the gcc compiler. It uses the gcc backend to generate optimized code.

python-async

framework to process interdependent tasks in a pool of workers

Async is one more attempt to make the definition and execution of asynchronous interdependent operations easy. For that to work, you may define tasks which communicate with each other by channels. Channels transfer items, which is very similar to bytes flowing through pipes uses in inter-process communication. Items will only be generated on demand, that is when you read from the respective output channel.

python-migrate

Database schema migration for SQLAlchemy - Python 2.7

Inspired by Ruby on Rails' migrations, migrate provides a way to deal with database schema changes in SQLAlchemy projects.

covered

Verilog code coverage analysis tool

Covered is a Verilog code coverage utility that reads in a Verilog design and a generated VCD/LXT dumpfile from that design and generates a coverage file that can be merged with other coverage files or used to create a coverage report. Covered also contains the GUI coverage report utility that reads in a coverage file to allow interactive coverage discovery. Areas of coverage measured by Covered are: line, toggle, memory, combinational logic, FSM state/state-transition and assertion coverage.