pdb2pqr

Preparation of protein structures for electrostatics calculations

PDB2PQR is a Python software package that automates many of the common tasks of preparing structures for continuum electrostatics calculations. It thus provides a platform-independent utility for converting protein files in PDB format to PQR format. These tasks include: * Adding a limited number of missing heavy atoms to biomolecular structures * Determining side-chain pKas * Placing missing hydrogens * Optimizing the protein for favorable hydrogen bonding * Assigning charge and radius parameters from a variety of force fields

python3-pdb2pqr

Preparation of protein structures for electrostatics calculations

PDB2PQR is a Python software package that automates many of the common tasks of preparing structures for continuum electrostatics calculations. It thus provides a platform-independent utility for converting protein files in PDB format to PQR format. These tasks include: * Adding a limited number of missing heavy atoms to biomolecular structures * Determining side-chain pKas * Placing missing hydrogens * Optimizing the protein for favorable hydrogen bonding * Assigning charge and radius parameters from a variety of force fields

libgnuradio-vocoder3.10.1

gnuradio vocoder functions

Library of vocoder blocks, including ulaw, alaw, gsm and codec2. Debian uses external libraries for gsm and codec2.

image-factory

Build golden Linux images

image-factory is a command line tool for building golden Linux images. It uses virt-install to do installations via the network. The installation and configuration of the images is done using the netinstall support from the distributions, i.e.

internetarchive

commandline interface to archive.org

Command-line tool (`ia`) for searching, downloading and uploading content to the Internet Archive.

libgnuradio-zeromq3.10.1

gnuradio zeromq functions

0MQ messaging library support. Provide network socket endpoints for gnuradio data and message streams. PUB/SUB, PUSH/PULL, REP/REQ models supported.