processing sequence alignments in SAM, BAM and CRAM formats

samtools

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

lib32gphobos3

Phobos D standard library (runtime library)

This is the Phobos standard library that comes with the D2 compiler.

r-cran-cliapp

create rich command line applications in GNU R

This GNU R package enables to create rich command line applications, with colors, headings, lists, alerts, progress bars, etc. It uses CSS for custom themes.

r-cran-areal

GNU R areal weighted interpolation

A pipeable, transparent implementation of areal weighted interpolation with support for interpolating multiple variables in a single function call. These tools provide a full-featured workflow for validation and estimation that fits into both modern data management (e.g. tidyverse) and spatial data (e.g. sf) frameworks.

c2go

tool for transpiling C to Go

This package contains a tool for converting C to Go.

pymatgen-test-files

Python Materials Genomics for materials analysis (test files)

Pymatgen (Python Materials Genomics) is a robust, open-source Python library for materials analysis. These are some of the main features: