covtobed-examples

example data and scripts for mindthegap

Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.

graywolf

Placement for digital VLSI design

This is a utility used to perform placement of digital VLSI designs. It is based on some code from the early 90s and it is one of the building blocks of the open source qflow digital design flow.

r-bioc-seqlogo

GNU R sequence logos for DNA sequence alignments

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

python-sphinxcontrib.rubydomain

Ruby domain for HTTP APIs - Python 2.x

This contrib extension, sphinxcontrib.rubydomain provides a Ruby domain to write Ruby documents.

libotbvectordatabase-7.1-1

ORFEO Toolbox library - OTBVectorDataBase

libexecline2.6

small and non-interactive scripting language (shared library)