python3-backoff

Function decoration for backoff and retry

This module provides function decorators which can be used to wrap a function such that it will be retried until some condition is met. It is meant to be of use when accessing unreliable resources with the potential for intermittent failures i.e. network resources and external APIs. Somewhat more generally, it may also be of use for dynamically polling resources for externally generated content.

r-bioc-purecn

copy number calling and SNV classification using targeted short read sequencing

This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, and has support for tumor samples without matching normal samples.

jags

Just Another Gibbs Sampler for Bayesian MCMC - binary

JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS.

libdolfinx-real0.4

Shared libraries for DOLFIN

DOLFIN is the Python and C++ interface of the FEniCS project for the automated solution of differential equations, providing a consistent PSE (Problem Solving Environment) for solving ordinary and partial differential equations. Key features include a simple, consistent and intuitive object-oriented API; automatic and efficient evaluation of variational forms; automatic and efficient assembly of linear systems; and support for general families of finite elements.

libjira-rest-perl

thin wrapper around Jira's REST APIs

The JIRA::REST module implements thin wrappers around Jira's REST APIs:

libinih1

simple .INI file parser

inih (INI Not Invented Here) is a simple .INI file parser written in C. It's only a couple of pages of code, and it was designed to be small and simple, so it's good for embedded systems. It's also more or less compatible with Python's ConfigParser style of .INI files, including RFC 822-style multi-line syntax and name: value entries.