pal2nal

converts proteins to genomic DNA alignment

PAL2NAL is a program that converts a multiple sequence alignment of proteins and the corresponding DNA (or mRNA) sequences into a codon-based DNA alignment. The program automatically assigns the corresponding codon sequence even if the input DNA sequence has mismatches with the input protein sequence, or contains UTRs, polyA tails. It can also deal with frame shifts in the input alignment, which is suitable for the analysis of pseudogenes. The resulting codon-based DNA alignment can further be subjected to the calculation of synonymous (Ks) and non-synonymous (Ka) substitution rates.
verifies the files on a live mounted ISO image

hashcheck

verifies the files on a live mounted ISO image

Provides a graphical interface to verify a live mounted ISO image. The image is expected to be mounted under /lib/live/mount/medium

python3-fast-histogram

Fast 1D and 2D histogram functions in Python

fast-histogram aims to provide simple and fast histogram functions for regular bins that don't compromise on performance. It doesn't do anything complicated - it just implements a simple histogram algorithm in C and keeps it simple. The aim is to have functions that are fast but also robust and reliable. The result is a 1D histogram function here that is 7-15x faster than numpy.histogram, and a 2D histogram function that is 20-25x faster than numpy.histogram2d.

python3-braceexpand

Bash-style brace expansion for Python

Implements Brace Expansion as described in the bash documentation.

python3-mockito

Spying framework for Python

This is a spying framework for Python, similar to Java's Mockito. For example:

libscsynth1

SuperCollider synthesis server library

SuperCollider is an environment and programming language for real time audio synthesis and algorithmic composition. It provides an interpreted object-oriented language which functions as a network client to a state of the art, realtime sound synthesis server.