pal2nal
converts proteins to genomic DNA alignment
PAL2NAL is a program that converts a multiple sequence alignment
of proteins and the corresponding DNA (or mRNA) sequences into
a codon-based DNA alignment. The program automatically assigns
the corresponding codon sequence even if the input DNA sequence
has mismatches with the input protein sequence, or contains UTRs,
polyA tails. It can also deal with frame shifts in the input
alignment, which is suitable for the analysis of pseudogenes.
The resulting codon-based DNA alignment can further be subjected
to the calculation of synonymous (Ks) and non-synonymous (Ka)
substitution rates.
hashcheck
verifies the files on a live mounted ISO image
Provides a graphical interface to verify a live mounted ISO image.
The image is expected to be mounted under /lib/live/mount/medium
python3-fast-histogram
Fast 1D and 2D histogram functions in Python
fast-histogram aims to provide simple and fast histogram functions for
regular bins that don't compromise on performance. It doesn't do
anything complicated - it just implements a simple histogram algorithm in C and
keeps it simple. The aim is to have functions that are fast but also robust and
reliable. The result is a 1D histogram function here that is 7-15x faster than
numpy.histogram, and a 2D histogram function that is 20-25x faster than
numpy.histogram2d.
python3-braceexpand
Bash-style brace expansion for Python
Implements Brace Expansion as described in the bash documentation.
python3-mockito
Spying framework for Python
This is a spying framework for Python, similar to Java's Mockito.
For example:
libscsynth1
SuperCollider synthesis server library
SuperCollider is an environment and programming language for real time
audio synthesis and algorithmic composition. It provides an interpreted
object-oriented language which functions as a network client
to a state of the art, realtime sound synthesis server.