libmoosex-attribute-chained-perl

Moose attribute that returns the instance to allow for chaining

MooseX::Attribute::Chained is a Moose Trait which allows for method chaining on accessors by returning $self on write/set operations.

pd-rtclib

Real Time Composition Library for Pure Data (Pd)

This software library offers the possibility to experiment with a number of compositional techniques, such as serial procedures, permutations and controlled randomness.

php-net-dnsbl

Checks if a given host or URL is listed on a DNSBL or SURBL

pbgenomicconsensus

Pacific Biosciences variant and consensus caller

The GenomicConsensus package provides Quiver, Pacific Biosciences' flagship consensus and variant caller. Quiver is an algorithm that finds the maximum likelihood template sequence given PacBio reads of the template. These reads are modeled using a conditional random field approach that prescribes a probability to a read given a template sequence. In addition to the base sequence of each read, Quiver uses several additional quality value covariates that the base caller provides.

kallisto-examples

near-optimal RNA-Seq quantification (example data)

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.

libisc-export1100

Exported ISC Shared Library