sortmerna
tool for filtering, mapping and OTU-picking NGS reads
SortMeRNA is a biological sequence analysis tool for filtering, mapping and
OTU-picking NGS reads. The core algorithm is based on approximate seeds and
allows for fast and sensitive analyses of nucleotide sequences. The main
application of SortMeRNA is filtering rRNA from metatranscriptomic data.
Additional applications include OTU-picking and taxonomy assignation available
through QIIME v1.9+ (http://qiime.org - v1.9.0-rc1).
SortMeRNA takes as input a file of reads (fasta or fastq format) and one or
multiple rRNA database file(s), and sorts apart rRNA and rejected reads into
two files specified by the user. Optionally, it can provide high quality local
alignments of rRNA reads against the rRNA database. SortMeRNA works with
Illumina, 454, Ion Torrent and PacBio data, and can produce SAM and
BLAST-like alignments.
libmkl-vml-avx
Intel® MKL : VM/VS/DF optimized for Intel® AVX enabled processors
Intel® Math Kernel Library (Intel® MKL) is a computing math library of highly
optimized, extensively threaded routines for applications that require
maximum performance.
libwxsqlite3-3.2-0
SQLite3 C++ wrapper for use in programs based on the wxWidgets
wxSQLite3 is a C++ wrapper around the public domain SQLite 3.x database
and is specifically designed for use in programs based on the wxWidgets
3.0 library.
libapertium3-3.8-1
Shared library for Apertium
An open-source shallow-transfer machine translation
engine, Apertium is initially aimed at related-language pairs.
libsfml-network2.6
Simple and Fast Multimedia Library - Network part
SFML is a modern multimedia library offering a wide range of subsystems
useful to produce a multimedia app. It offers OpenGL integration for
Hardware accelerated Graphics, Windowing and Input support, Audio and
Network facilities and supports GNU/Linux, MS Windows and Mac OS X.
flydraw
command-line drawing tool
flydraw is a drawing tool based on an interpreter which parses a
language featuring rich graphic primitives; it uses libgd to output
GIF, JPEG, or PNG files.