sortmerna

tool for filtering, mapping and OTU-picking NGS reads

SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. The core algorithm is based on approximate seeds and allows for fast and sensitive analyses of nucleotide sequences. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data. Additional applications include OTU-picking and taxonomy assignation available through QIIME v1.9+ (http://qiime.org - v1.9.0-rc1). SortMeRNA takes as input a file of reads (fasta or fastq format) and one or multiple rRNA database file(s), and sorts apart rRNA and rejected reads into two files specified by the user. Optionally, it can provide high quality local alignments of rRNA reads against the rRNA database. SortMeRNA works with Illumina, 454, Ion Torrent and PacBio data, and can produce SAM and BLAST-like alignments.

libmkl-vml-avx

Intel® MKL : VM/VS/DF optimized for Intel® AVX enabled processors

Intel® Math Kernel Library (Intel® MKL) is a computing math library of highly optimized, extensively threaded routines for applications that require maximum performance.

libwxsqlite3-3.2-0

SQLite3 C++ wrapper for use in programs based on the wxWidgets

wxSQLite3 is a C++ wrapper around the public domain SQLite 3.x database and is specifically designed for use in programs based on the wxWidgets 3.0 library.

libapertium3-3.8-1

Shared library for Apertium

An open-source shallow-transfer machine translation engine, Apertium is initially aimed at related-language pairs.

libsfml-network2.6

Simple and Fast Multimedia Library - Network part

SFML is a modern multimedia library offering a wide range of subsystems useful to produce a multimedia app. It offers OpenGL integration for Hardware accelerated Graphics, Windowing and Input support, Audio and Network facilities and supports GNU/Linux, MS Windows and Mac OS X.

flydraw

command-line drawing tool

flydraw is a drawing tool based on an interpreter which parses a language featuring rich graphic primitives; it uses libgd to output GIF, JPEG, or PNG files.