seqprep

stripping adaptors and/or merging paired reads of DNA sequences with overlap

SeqPrep is a program to merge paired end Illumina reads that are overlapping into a single longer read. It may also just be used for its adapter trimming feature without doing any paired end overlap. When an adapter sequence is present, that means that the two reads must overlap (in most cases) so they are forcefully merged. When reads do not have adapter sequence they must be treated with care when doing the merging, so a much more specific approach is taken. The default parameters were chosen with specificity in mind, so that they could be ran on libraries where very few reads are expected to overlap. It is always safest though to save the overlapping procedure for libraries where you have some prior knowledge that a significant portion of the reads will have some overlap.

gdc-5-s390x-linux-gnu

GNU D compiler (version 2)

This is the GNU D compiler, which compiles D on platforms supported by gcc. It uses the gcc backend to generate optimised code.

libgnuradio-filter3.8.0

gnuradio filter functions

jruby-openssl

Ruby library that emulates the OpenSSL native library for JRuby

OpenSSL ruby native library provides SSL, TLS and general purpose cryptography by wrapping the OpenSSL library.

librlottie0-1

library for rendering vector based animations and art

Lottie loads and renders animations and vectors exported in the bodymovin JSON format. Bodymovin JSON can be created and exported from After Effects with bodymovin, Sketch with Lottie Sketch Export, and from Haiku.

gm2-9-mips64el-linux-gnuabi64

GNU Modula-2 compiler (cross compiler for mips64el architecture)

This is the GNU Modula-2 compiler, which compiles Modula-2 on platforms supported by gcc. It uses the gcc backend to generate optimised code.