daligner

local alignment discovery between long nucleotide sequencing reads

These tools permit one to find all significant local alignments between reads encoded in a Dazzler database. The assumption is that the reads are from a Pacific Biosciences RS II long read sequencer. That is, the reads are long and noisy, up to 15% on average.

libunix-errno-ocaml

errno variant that includes a variety of constructors

An errno variant similar to Unix.error but including POSIX 2008, Linux, OS X, and FreeBSD constructors. A macro definition type is also provided in order to transport a specific errno-integer map as is the case with FUSE or 9p2000.u. The types and their functions reside in Errno and are independent of any Unix bindings. This makes the library's types usable from MirageOS on top of Xen.

libstarpu-contrib-1.3-9

Task scheduler for heterogeneous multicore machines

StarPU is a runtime system that offers support for heterogeneous multicore machines. While many efforts are devoted to design efficient computation kernels for those architectures (e.g. to implement BLAS kernels on GPUs or on Cell's SPUs), StarPU not only takes care of offloading such kernels (and implementing data coherency across the machine), but it also makes sure the kernels are executed as efficiently as possible.

node-rollup-plugin-terser

Rollup plugin to minify generated es bundle

This plugin for rollup uses terser to minify generated bundle and supports ES6.

python3-django-timezone-field

database and form fields for pytz objects (Python3 version)

A Django app providing database and form fields for pytz timezone objects. Values are validated against pytz.common_timezones and stored as strings. The form field can display timezones as locations or locations with offsets.

bamtools

toolkit for manipulating BAM (genome alignment) files

BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research.