daligner
local alignment discovery between long nucleotide sequencing reads
These tools permit one to find all significant local alignments between
reads encoded in a Dazzler database. The assumption is that the reads are
from a Pacific Biosciences RS II long read sequencer. That is, the reads
are long and noisy, up to 15% on average.
libunix-errno-ocaml
errno variant that includes a variety of constructors
An errno variant similar to Unix.error but including POSIX
2008, Linux, OS X, and FreeBSD constructors. A macro
definition type is also provided in order to transport a
specific errno-integer map as is the case with FUSE or
9p2000.u. The types and their functions reside in Errno and
are independent of any Unix bindings. This makes the
library's types usable from MirageOS on top of Xen.
libstarpu-contrib-1.3-9
Task scheduler for heterogeneous multicore machines
StarPU is a runtime system that offers support for heterogeneous
multicore machines. While many efforts are devoted to design efficient
computation kernels for those architectures (e.g. to implement BLAS
kernels on GPUs or on Cell's SPUs), StarPU not only takes care of
offloading such kernels (and implementing data coherency across
the machine), but it also makes sure the kernels are executed as
efficiently as possible.
node-rollup-plugin-terser
Rollup plugin to minify generated es bundle
This plugin for rollup uses terser
to minify generated bundle and supports ES6.
python3-django-timezone-field
database and form fields for pytz objects (Python3 version)
A Django app providing database and form fields for pytz timezone objects.
Values are validated against pytz.common_timezones and stored as strings. The
form field can display timezones as locations or locations with offsets.
bamtools
toolkit for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.