stringtie

assemble short RNAseq reads to transcripts

The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.

scoary

pangenome-wide association studies

Scoary is designed to take the gene_presence_absence.csv file from Roary as well as a traits file created by the user and calculate the associations between all genes in the accessory genome and the traits. It reports a list of genes sorted by strength of association per trait.

libgphobos71-amd64-cross

Phobos D standard library (runtime library)

lib32ubsan1-x32-cross

UBSan -- undefined behaviour sanitizer (32bit)

UndefinedBehaviorSanitizer can be enabled via -fsanitize=undefined. Various computations will be instrumented to detect undefined behavior at runtime. Available for C and C++.

gccgo-x86-64-linux-gnux32

Go compiler (based on GCC) for the x32 architecture

This is the GNU Go compiler, which compiles Go on platforms supported by the gcc compiler. It uses the gcc backend to generate optimized code.

node-snapdragon-util

Utilities for the snapdragon parser/compiler

Module containing common code for snapdragon.