ecopcr

estimate PCR barcode primers quality

DNA barcoding is a tool for characterizing the species origin using a short sequence from a standard position and agreed upon position in the genome. To be used as a DNA barcode, a genome locus should vary among individuals of the same species only to a minor degree and it should vary among species very quickly. From a practical point of view, a barcode locus should be flanked by two conserved regions to design PCR primers. Several manually discovered barcode loci like COI, rbcL, 18S, 16S and 23S rDNA, or trnH-ps are routinely used today, but no objective function has been described to measure their quality in terms of universality (barcode coverage, Bc ) or in terms of taxonomical discrimination capacity (barcode specificity, Bs ).

python3-bottle

fast and simple WSGI-framework for Python 3

Bottle is a fast and simple WSGI-framework for the Python3 programming language. It offers request dispatching with url parameter support (routes), templates, key/value databases, a built-in HTTP server and adapters for many third party WSGI/HTTP-server and template engines.

postgresql-17-pgq3

Generic queue for PostgreSQL

This extension provides generic queues for PostgreSQL.

eye

semantic web reasoning engine

Euler Yet another proof Engine (EYE) is a reasoning engine supporting the Semantic Web layers. It performs semibackward chaining and it supports Euler paths. Via N3 it is interoperable with Cwm.

postgresql-17-pgpool2

connection pool server and replication proxy for PostgreSQL - modules

pgpool-II is a middleware that works between PostgreSQL servers and a PostgreSQL database client. This package contains support modules for the PostgreSQL 17 server:

postgresql-17-ip4r

IPv4 and IPv6 types for PostgreSQL 17

This PostgreSQL module provides several data types which can contain single IPv4 or IPv6 addresses or a range of such addresses.